-
R N A F L O W : R N A - S E Q A S S E M B L Y & D I F F E R E N T I A L G E N E E X P R E S S I O N A N A L Y S I S
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =…
-
NA12878 by nanopore
https://github.com/nanopore-wgs-consortium/NA12878
Illumina platinum genomes
https://github.com/Illumina/PlatinumGenomes
-
**Is your feature request related to a problem? Please describe.**
Difficulty developing an assembly benchmarking pipeline due to the dependencies associated with two key bioinformatic tools use in t…
-
Hi,
I tried to do the installation of illumina-utils for anvio with pip-20.1.
The following error came up.
`Using cached illumina-utils-2.7.tar.gz (3.3 MB)
ERROR: Command errored out with e…
-
Hi,
I have some questions about the fixref plugin :
1) Looking at the code, I can see that "TOP-compatible" and "BOT-compatible" outputs in the logs are not counts but can only take 0 or 1 value…
-
Can we use both Nanopore and Illumina reads concatenated together into a single fastq file for the Mitochondrial genome assembly using Novoplasty? Or is Novoplasty specific for Illumina Data?
-
I have gotten the example data to run with InteMAP just fine. However now I am trying to run two of my own files before scaling up to my full data set. I have metagenomics samples from an Illumina his…
-
Hi dfguang,
I am trying to use pruge_dups for a mammalian assembly since the busco results came out with a high duplication rate:
C:84%[D:49%],F:7.5%,M:7.7%,n:3023
After running purge_dups as rec…
-
Hello,
Trying some basic ProjectData get requests via the ICA SDK python.
I have a simple python script here:
Details
```python
#!/usr/bin/env python3
"""
Test get data object with…
-
So I ran MetaBIDX with given test data reads ( _r1 and __r2) fastq with my build index. And it ran successfully
![image](https://github.com/pdtrang/MetaBIDx/assets/78298300/d023f81d-6df8-40d1-bbf1-…