merenlab illumina-utils issues

merenlab / illumina-utils

A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

GNU General Public License v2.0

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issues

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avoid oversubscription

#32 EricDeveaud closed 1 year ago
6
default number of cores

#31 EricDeveaud opened 1 year ago
2
issue with demultiplexing example

#30 dnolin13 closed 1 year ago
1
iu-trim-fastq not working

#29 FlorianTrigodet closed 2 years ago
3
Failed quality curve generation

#28 satkinson0115 closed 3 years ago
2
iu-subsample-fastq not recognizing paired ends

#27 luuuuuuuke closed 3 years ago
12
Installation with pip-20.1 failed

#26 DennisJakob opened 4 years ago
2
Rapid multithreaded merging option

#25 semiller10 closed 4 years ago
2
Options to report prefix and trim suffix sequences

#24 semiller10 closed 4 years ago
1
how to demultiplex unknown casava version fastq file ?

#23 mariabernard opened 4 years ago
2
not compatible with python 3.6

#22 dieunelderilus closed 4 years ago
1
Suggested changes to iu-remove-ids-from-fastq

#21 ShaiberAlon closed 4 years ago
0
remove the U from open since it is not needed.

#20 ShaiberAlon opened 5 years ago
0
using iu-remove-ids-from-fastq to remove read ids obtained from a bam file

#19 ShaiberAlon closed 5 years ago
1
iu-demultiplex creating errors

#18 ETaSky opened 6 years ago
0
Help interpreting iu-filter-quality-minoche crash

#17 jarrodscott closed 6 years ago
12
Optional read fate

#16 ozcan closed 6 years ago
1
make read fate optional

#15 ozcan closed 6 years ago
0
fastaunique

#14 annaship closed 6 years ago
10
Issue with config file for quality filtering

#13 vnsriniv closed 6 years ago
6
Update README.md

#12 AstrobioMike closed 6 years ago
1
Subsample fastq and fasta scripts

#11 ekiefl closed 6 years ago
0
add iu-subsample-fastq

#10 ekiefl closed 6 years ago
0
enforced integer division for indexing

#9 jordangumm closed 6 years ago
1
Python3 compatibility - iu-merge-pairs

#8 daniclaar closed 7 years ago
2
Update setup.py

#7 fsislaben closed 7 years ago
1
SequenceSource compressed for fasta

#6 annaship opened 7 years ago
2
Python 3 compatible

#5 dridk opened 7 years ago
1
--ignore-deflines flag is incompatible with --compute-qual-dicts flag.

#4 meren opened 7 years ago
0
iu-merge-pairs error

#3 nikolay12 closed 7 years ago
3
Update README.md

#2 HMorrison closed 9 years ago
3
Merging ITS amplicons

#1 meren closed 10 years ago
0