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* openOmics version: 0.8.4
* Python version: 3.9
* Operating System:
### Description
Running `MiRTarBase(path="/data/datasets/Bioinformatics_ExternalData/miRTarBase/")` in the `generate_MiRTar…
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I am trying to run open-workflow on a timsTOFpro data but it is failing with "could not find mzData" message? I have loaded the output folder at https://drive.google.com/drive/folders/1U_n-hxpWwUq7EDj…
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Create a section for each environment that helps a user transition to using the tool/environment in AnVIL
kozbo updated
3 years ago
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I'm working on insect vector metabolism (mostly on yellow fever/Zika vector Aedes aegypti) and have quantitative proteomic and untargeted metabolomic data for several experimental conditions. Searchi…
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@daichengxin :
Can you add to each SDRF in my fork https://github.com/ypriverol/proteomics-metadata-standard the field
`Technology Type` with the value: `proteomic profiling by mass spectr…
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I'm working on Trypanosoma cruzi (CL Brener) metabolism and have quantitative transcriptomic and metabolomic that I'd like to usein Metaboverse. But searching on Metaboverse I realized that T. cruzi i…
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For the two datasets shown in this spreadsheet https://docs.google.com/spreadsheets/d/1YQgpNjZOi5RIDNX91xUhBZavVeObDfEX-WRMMu1csnw/edit#gid=586027356
Disconnect the datasets from the current sample…
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Summary:
When running the same stan model in parallel on a high number of datasets on multiple cores, using BiocParallel package with MulticoreParam back-end, I get an error message linked to shared …
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Hello,
I am trying to replicate the same dataset for EC prediction(EC40 and EC50) as in your paper UDSMProt but I find some difficulties.
First in your script code/create_datasets.sh in line 27 : …
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The export to OpenMS with technical replicates is wrongly handled.