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I recently added a MNN-based MST to **TSCAN** and I wonder whether the code would be of interest here.
http://bioconductor.org/books/release/OSCA/trajectory-analysis.html#tweaking-the-mst
http://b…
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Hi Danny,
I am very appreciate for using RNAFramework, it helped me a lot !
Unfortunately I've been unable to use the rf-fold to fold RNA.
the code is:
~/RNAFramework/rf-fold /home/jql/RNAFram…
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I am reading a paper (pmid:11927565) that concludes:
"TRM7 codes for a MTase that catalyses the formation of 2'-O-methylnucleotides at positions 32 and 34 of the yeast tRNAPhe, tRNATrp and, possibly,…
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Hi CentroidFold team!
I am running CentroidFold, with default parameters, for 200000 sequences of length 52.
In about 25% of them, CentroidFold predicts:
........................................…
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Could I request a new complex term:
7SK snRNP
is_a small nuclear ribonucleoprotein complex
https://en.wikipedia.org/wiki/7SK_RNA
Def: A complex composed of the 7SK small nuclear RNA (7SK snR…
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I start by testing if viability readouts in the PRISM assay for A549 are similar to cell health model estimates. The DepMap data are accessed [here](https://depmap.org/portal/download/all/?release=PRI…
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Hello,
Working on the annotations to TFAM and the family PTHR48112, the function of the mt transcription activator is a mix of a dbTF and a GTF: the binding to the promoter is not sequence-specifi…
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while looking into #1159, I noticed that these three nodes in KG2.3.4 have the name "LAP", but the first item in their `synonym` fields is TGFB_, which seemed slightly odd. then I noticed that if you …
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Dear developers of SPOT-RNA,
I am excited to run this SPOT-RNA tool. I found this error `tensorflow.Example exceeds maximum protobuf size of 2GB`. Is there a length limit for the input sequence? I …
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Hi All
As part of the dbTF discussions it was agreed that AT hook proteins are not dbTFs. These bind a short sequence of DNA that is not long enough to provide a genomic address, instead they often…