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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of anndata.
- [ ] (optio…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ZhangLabGT/scMultiSim
Confirm the following by ed…
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Hello! Thank you so much for providing this great package.
I did meet a similar issue for a long time for the late lineage's arrow being reversed. Follow the upstream computation and with the para…
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This is a very good job, but I encountered the following error while running the first example:
`$ unigbsa-pipeline -i example/1ceb/1ceb_protein.pdb -l example/1ceb/1ceb_ligand.sdf -o BindingEnergy.c…
kdpan updated
9 months ago
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Hi scvelo people,
While running scv.tl.recover_dynamics(adata, n_jobs=8) I get the error below:
I used the data & the code from the vignette https://cellrank.readthedocs.io/en/latest/notebooks/tu…
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I am getting an error only when trying to correct the velocity directions for both cell_wise and the gene_wise corrections.
The general code workflow I have been running is below
# Perform t…
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...
```
scv.pl.velocity_embedding_stream(cdata,basis='umap',legend_loc='right margin',fontsize=20,figsize=(8,8),
title='RNA Velocity Stream',smooth=.5, min_ma…
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...
Thank you for developing such a nice tool for unified cell fate inference. I try to follow your tutorial as shown here: https://cellrank.readthedocs.io/en/latest/notebooks/tutorials/kernels/200…
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plotting raises Attribute error
```python
scv.pl.velocity_embedding_stream(adata, basis='umap')
```
Error output
```pytb
-----------------------------------------------------…
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Thank you for developing such a nice tool for unified cell fate inference. I try to follow your tutorial as shown here: https://cellrank.readthedocs.io/en/latest/notebooks/tutorials/kernels/200…