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I initially discovered this while building the 2024.5 docs, but also replicated locally. Within a 2024.5 amplicon environment (on mac OS) the command in PD mice that utilizes ancombc with `donor * gen…
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Hi there,
I browsed your interesting [paper](https://doi.org/10.1093/nar/gkad158) (that isnt mentioned in the README) and was intrigued by the speed improvement while promising a similar performanc…
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This is due to
```js
export class SearchResultsTable extends React.Component {
public componentDidMount() {
if (isEmpty(this.props.results.data)) {
this.props.search()
}
}
`…
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We want to start to accumulate a bibliography of papers that describe oligotypes and amplicon and exact sequence variants. Add new references to this thread.
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Hi there,
I am trying to simulate nanopore amplicon reads (~6.5 kbp longest amplicon, ~37 kb total sequence) but the simulation part seems to hang and never proceed. I was able to train an error pr…
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**Bug Description**
Plugin citation titles become capitalized (and subsequent letters lowercase) in the plugin API documentation, even if the titles should not be capitalized (or all caps). This is n…
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Hello,
I like dadasnake and I am using it for processing 16S rRNA amplicons. I have some data from ITS and saw there is support for ITSx. However, there is an newer alternative for ITSx that uses f…
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Hi Eric,
thanks for your awsome work!
The filtering for labeling only those genes specified with -g does not work for me.
If I run the scatter command of cnvkit (version 0.9.5) with the range…
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In some cases, a user might have sequenced an amplicon that is longer than the sequences in the database one wants to use. For this to work, ASV sequences could be cut before taxonomy assignment.
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Hello Joey,
Thanks for developing this software. It serves as a great model for amplicon analysis and R software development.
A collaborator recently requested alpha diversity metrics of evenness. …