-
Hello,
I'm trying to use P-GRe to detect pseudognenes on Asellidae, but I'm encountering an error. I have no idea how to solve this problem. I did my annotation with Braker3, let me know if you need…
-
Hi, Greetings...
Congratulations on the tool developed. The tool is user friendly and easy to work with. However when we ran our data using SRST2 approach for NCBI retrieved draft genomes, the result…
-
Meta grabbed locally:
https://scontent.fsnc1-1.fna.fbcdn.net/hphotos-xal1/v/t34.0-12/12966130_1158750647471338_22715508_n.png?oh=59b70d75a0ee1c5116c4ee8942ba7ea9&oe=570D55C1
Meta grabbed from HTTP re…
-
Dear Virsorter2 team, thank you again for your awesome work ,but when I use a single sample to test using the following code
" virsorter run -i ~/testfile/FC03.contigs.fa -w ~/result/Virsorter2/tota…
-
code：smoove genotype -d -x -p 20 --name 432-joint --outdir ./ --fasta ../../03_genome/genome1.3.fna --vcf mer…
-
I'm trying to run the Phenotypes plugin, but adding the `--offine` option causes the following error. This is using a recent docker container with VEP 113. The `Phenotypes.pm_homo_sapiens_113_GRCh38.g…
-
The `strain` column isn't unique. Might need to detect this, and appened the `GCF_` number to the strain to discriminate?
```
/home/tseemann/tmp/B.cereus/human_readable/refseq/bacteria/Bacillus/c…
-
Mummer hangs when executing the following command:
```
dnadiff 2506783023.fna 2508501061.fna -prefix 2506783023__2508501061
```
Genomes are attached:
[genomes.zip](https://github.com/mummer4/mu…
-
Hi,
I got the following error while testing viga using my own viral contigs:
```
...
Detected 8 ORFs in CONTIG_996.fna
Detected 12 ORFs in CONTIG_997.fna
Detected 8 ORFs in CONTIG_998.fna
…
housw updated
5 years ago
-
When running charcoal to clean contigs, I noticed:
```
python -m charcoal run inputs/charcoal-conf.yml all_clean_contigs
```
```
filter rank is none; not doing any cleaning.
wrote 2171793 clean …