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Dear Genomescope developers, thank you for the great tool. We use it a lot and it's great! I had an interesting result recently, which resulted in a smaller genome size estimate than we would expect (…
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**case 1
Downloaded and uncompressed minikraken2_v1_8GB database, then:**
$ bracken-build -d minikraken2_v1_8GB -t 32 -k 35 -l 76
>> Selected Options:
kmer length = 35
read length …
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I'm trying to run a Nanopore simulation however I haven't been able to fix the following error regarding sklearn.neighbors.kde
```(camisim) sternesp@cl5n009:~/microbiome/users/sternesp/camisim/CAMI…
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Hi Team,
the tool is very simple to use. thank you!
I tried to test the tool on one of the sars (SRR19645658 -- Illumina) dataset to check using a k-mer size of 17 and followed by the genome siz…
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> Merged from #59 by @zhenzhenyang-psu:
I have spent more time on studying the smudeplot code and have found out the "peak" column from "peak_points" data matrix recorded which bins share the same…
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I installed PGGB with singularity, using the latest docker image (20220622084213cb5e81). The software runs well until the smoothxg function, where it is terminated by signal 4. How can I fix that ?
…
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Hi,
I am looking into the kmer parameter distributions, and I noticed that, the kmer distribution information ( mean of the event current, std, etc) are not the same in between Nanopolish model and…
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Hi Kamil,
I've run into another issue with some other genomes I am working on. These are also plant pathogens. We expect that they are diploids with low heterozyosity. I used the following command…
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Hey to all,
Really nice tool, and I am pretty happy about the conda installation.
Just a notice to everyone: I am trying to run this tool on kinda lot of Metagenome-Associated Genomes (MAGs). In the…
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what this means in practical concerns is not clear, but...
cc @bluegenes