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`krakenuniq-build` died due to an out-of-memory error:
```
Found jellyfish v1.1.12
Kraken build set to minimize disk writes.
Finding all library files
Found 10000 sequence files (*.{fna,fa,ffn,…
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Hello,
I am hoping to use wengan as an alternative to MaSurCA. However, my initial assembly using 50X PCR-free illumina ( 2x 150bp) and 5x nanopore has been somewhat suboptimal using the default v…
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Hello
Firstly - thank you for this tool it is proving super useful!
I am using `deeptools 3.5.0`
I have successfully run `plotCoverage` on my `.bam` file and it has output the coverage plot.
…
EveTC updated
2 years ago
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I've been running Flye on some PacBio data which is high quality but for a long and highly repetitive genome and I don't have a lot of coverage (cost constraints). Progress was fine up to the point wh…
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Hello,
I am trying to use MaSuRCA on a cluster with slurm. The job fails after some times.
`[mar oct 29 20:34:36 CET 2019] Overlap/unitig failed, check output under CA/ and runCA1.out, try re-ge…
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Hello sir,
I am assembling the plant mitochondrial genome using the whole genome ONT reads. I am doing the first step (correction with the following parameters:
canu -correct -p pnt -d pnt genome…
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Hi Erin,
I edited the UPHL.config file calling it FBPHL.config
Within the file, I edited the comment portion, replacing it with the path of my Donut_Falls.nf file:
nextflow run /home/bi_fellow/Don…
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Here's my command
```
longstitch tigmint-ntLink-arks \
draft=assembly \
reads=reads \
t=40 \
G=800000000 \
span=2 \
a=0.5
```
But I get the following error -
…
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### Actual Behavior
If a source tarball includes absolute paths or paths like `sub/../../file-in-parent-dir` that traverse parent directories higher than the tarball's root dir, `conda-build` e…
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Hello,
I am trying to use samba to improve scaffolding of a mammalian genome with some ONT reads.
Here is my call:
samba.sh -r $GENOME -q $READS -d ont -t 10 -a merges.file.txt > samba.out.tx…