-
**Describe the bug:**
binning-prokaryote fails at 7__dastools step. dastools appears to run/start but fails after calculating contig lengths.......
**Versions**
veba_binning-prokaryotic_1.4.1.s…
-
Hi,
Thanks for the great database and the scripts provided.
I have a few general questions about the output files and recommendations on how to interpret them:
1. First, would you recommend …
-
Hi @linxingchen
I've noticed that sometimes COBRA prints contig names and numbers on the screen without a clear explanation of what they represent. It appears that the code in [these lines](https:…
-
Hi Sergey,
Thank you so much for this tool. I have used PCR primers that tile across the whole genome of a virus. Unfortunately, one of the primers hitting a key gene spanning 1400 base pairs is no…
-
Hello,
I'm working on assembling small, (segmented viral genomes with Canu. The total genome is around ~13kb, the 3 segments range from ~2.5 kb - 7 kb. I have a multiplexed ONT dataset where the di…
-
Hi, jiarong. I allocated 28 FAT nodes(512GB in memory) on my server to run VirSorter2. And my contigs.fasta size is 3.6GB. VirSorter2 has been running for nearly 4 days and has just finished Step 2 - …
-
Thanks for creating this useful tool. Is it possible to provide the expected output for the SRS1735492 file you used as an example for your viral prediction pipeline?
-
## Short description of the problem
`anvi-get-sequences-for-hmm-hits` fails saying the expected output from muscle is missing when large genes are present.
## anvi'o version
```
Anvi'o .....…
-
Hi , I am having an issue running this barcode, it does not have alot of reads, so it could be that no contigs will be assembled, but I just wanted to double check with you. I am doing metagenomic vir…
-
Dear Josh,
I hope all is well. Erfan again!
I wanted to suggest expanding the VEBA's viral binning toolkit. I specifically request this since you mentioned VEBA is there to speed up the ad-hoc …