-
Hello,
I am interested in running RFPlasmid on an Enterobacteriaceae dataset and I see there is a precomputed database for it.
However, I am wondering whether it would not be wise to create an u…
-
Various settings will be tested, as choosing the appropriate kmer size is not always straightforward.
**Pros of small kmer**
- Can reduce memory requirements and computation time.
- Can help pres…
-
## Check Documentation
I have checked the following places for your error:
- [x ] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [x ] [nf-core/hic pipeline documen…
-
Large parts of the acceptance test document look like it could be automated with [Postman](https://github.com/genomizer/genomizer-documentation/wiki/Testing-the-Genomizer-server-with-Postman) (at leas…
-
From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1662
S:T22N seems currently as fast as S:S31del globally. This derives by many different combinations so i think it is prudent …
-
Hi,
We'd like to request a new term as part of the CFDE project for Kids First DCC.
new term label: linked-read sequencing assay
parent: DNA sequencing assay, OBI:0000626
definition: A DNA seq…
-
Add a limit to the number of glyphs to render (default 30) to address problem with large, flat genome representations reported in SynBioHub Issue #626.
-
Hi,
I want to run "mmseqs easy-rbh" on all pairs of a large dataset of genomes (let's say 100 genomes, so 10,000 pairs). I tested on 1 pairs and it took 27 seconds to run.
I thought to use the mod…
-
Issues like this show that large amounts of data with small genomes e.g. covid can bog down the browser
https://github.com/GMOD/jbrowse/issues/1524
There are some things that this module cou…
-
Hi!
I'm using the STAR recipe to index a given genome appropriately.
```
STAR \ (test-star-bioconda)
--runMod…