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Hi all,
first some background:
it seems like [sourmash](https://github.com/dib-lab/sourmash) is going to be a thing; I'm building it into a metagenomics data exploration tool, and it's already integ…
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Hi
I have fastq files of metagenome seq, I also have the whole genome of specific bacteria,
I want to know if phyloseq can work with this kind of data.
Thanks
Atara
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### Description of bug
Hello！
I tried to use Spades to assemble metagenomes on HPC by submitting Slurm scripts. After running the program for a period of time, the log file showed the following erro…
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-----Here is the wrong code-----
2022-08-19 23:41:23 [INFO ] User input: /home/miniconda3/envs/diting-env/bin/diting.py -r rawdata -o testone -n 120
**************[1/12] Check database**********…
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I'm trying to assemble some publicly available metagenomic data using metaspades. The data is here: https://www.omicsdi.org/dataset/omics_ena_project/PRJNA379494. I'm testing the first set of paired-e…
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Hi!
I am doing similar virus discovery analysis with Snakemake as your work. I am wondering if you have published your work before? Do you have a plan to get family and genus level taxonomy informa…
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Hi, I've been trying to set up the mar database for a metagenomics project, but I've been running into two odd issues:
1. Sometimes, when installing the database (I've found that this goes with all…
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from the OSS folder, need to identify the content we want to convert into our current bookdown structure for the Delta training
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Dear author,
I try to use extract_bgcs_metadata.py to get the bgc metadata from bigslice result from your example input folder, but it return error as follows:
(bigslice) [yutao@myosin example]$ l…