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**Snakemake version**
6.3.0
**Describe the bug**
A conda env which works locally does not work on google cloud life sciences
I have a conda env in my workflow (https://github.com/mw55309/dog_m…
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Hello there!
we used dada2 to generate the ASVs for our study on soil microbiome and we were able to identify 119,161 ASVs after prevalence filtering, removal of chloroplast and mitochondrial seqeunc…
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Dear atlas developers/users,
I have generated a gene catalog using atlas. Do you have any guidline how to map back and quantify the proportion of genes (I guess noramlizing by gene length) in the d…
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**problem**: I have MiSeq PE metabarcoding fastq files from bacteria, but **no** mock community sequenced.
**I want** to validate my bioinformatics workflow.
**question**: as a partial solution, cou…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/YuLab-SMU/MicrobiomeProfiler
Confirm the followin…
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Dear Francisco,
Recently, I have tried to use your pipeline to analyse some metagenome data. For the bin, i found I can only get about 30 MAGs of high quality (completeness > 90% by checkM). So I am …
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Hi,
Since this is not exactly a technical support related issue, I thought that it might be appropriate to open an issue here. I apologize if not and can move this to the bioBakery forum.
I am …
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Your data:
```csv
Yanxian Li,@yanxianl,0000-0001-8529-2564,yanxianl@nmbu.no,"aquaculture, nutrition, microbiome","Bash (basic), python (basic), R (intermediate)"
```
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How …
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Hi All,
Thank you for your efforts.
I'm getting some unexpected behaviour when using the `transform` function.
See below. I'm getting the exact same results when using `transform` whether the…
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Hi,
if we first agglomerate data in a tse object to e.g. Phylum level and then try to convert to pseq, we get an error `Error in validObject(.Object): invalid class "phyloseq" object:
Component t…