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For example in Decipher [ARID1B](https://decipher.sanger.ac.uk/gene/ARID1B#phenotypes)
```
Code Phenotype Affected patients with Sequence Variants in ARID1B Percentage of phenotyped patients wi…
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Hello, I am learning to perform models with your pipeline. While reading the article "Exploring the phenotypic consequences of tissue
specific gene expression variation inferred from GWAS summary sta…
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Hi, I'm trying to run the flow via snakemake (snakemake --cores all --use-conda ) but I get this error.
https://raw.githubusercontent.com/akcorut/kGWASflow/v1.3.0/workflow/rules/common.smk:98: Sy…
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Before running the sol GS pipeline, mixed model analysis, or GWAS a decision needs to be made about which trials and which plots should be used for a given trait. For example, before I run the sol GS …
ch728 updated
3 years ago
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Hey,
I used kraken to get the taxonomic abbundance estimations for my shotgun data. The output I get from kraken contains both counts and taxonomy. This format is however not supported to set up an…
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```
$ ls RawDataBIDS/*/sub-*/ses-?/anat/*T1w.nii.gz | wc -l
960
```
and if i get the participants.tsv and simply concatenate them
```
$ find . -name "participants.tsv" | xargs cat | wc -l
…
satra updated
4 years ago
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### Description
As a developer, I want to increase the number of models and data in the PDX Finder.
Models to add: none
Data to add: RNAseq and WES for already submitted BC models from Caldas lab - U…
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@kevinschaper reports that kg-phenio may be missing edge categories.
- [x] Check if edge categories are present in the KGX output.
- [ ] If not, investigate the transform and the PHENIO build.
- …
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Here we consider the types of higher-order **clinical significance** annotations that link 'variants' to 'conditions' to which they might contribute or impact clinical management of, and which we migh…
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Is it possible to make a prediction using DTI-VOODOO for a given drug and protein using their SMILES and sequence representation as the only input?
is it possible to train DTI-VOODOO on a custom se…