-
ClinVar doesn't like pseudogenes, we should remove their genenames in the ClinVar submission files to get them through validation. Pseudogene that has caused trouble: FTHL18P.
If a variant with a p…
-
- [x] When mitosis or meiosis is selected, an animation screen appears similar to the tutorial screen showing the copying of each gene tile.
- [x] Genes get better or worse using the same coloring p…
-
Hi ! I've tried to run padloc with .faa and .gff files and I had an error. Thinking the issue was my files, I've tried with test data and get the same error :
`padloc --faa GCF_001688665.2.faa --g…
-
Hi,
Thank you for your work on this tool and the nice tutorials detailing its use. I have a question regarding the use of the `--pooled-genes` option when building the ioi/ioe files from loci-based…
-
I was wondering if it would be possible to polish my contigs using a custom database of genomes. I've identified a number of viruses on Nanopore contigs, but most don't have any similar genome in NCBI…
-
## Problem description
I pulled the latest gff3 file for Zea mays from refseq (https://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/Zea_mays/annotation_releases/current/)
I tidied the file with: gt g…
-
Possible pipelines
https://www.sciencedirect.com/science/article/pii/S0145305X17300630
>o do this, contigs were passed through a series of filters which are aimed to identify and discard all trans…
sr320 updated
2 years ago
-
Hi,
Thanks for developing this useful software.
After the 6th step, generating the consensus sequences, will the complementary reads with poly-T be removed ? Do they contribute to the step of comp…
ssscj updated
2 years ago
-
Dear EduEyras
I analyzed my own RNA-seq data with SUPPA2，and encountered some question.
when I use the test data you provided, the SUPPA2 is running without any error. but when I used SUPPA2 to ana…
-
from
https://github.com/pombase/pombase-chado/issues/861#issuecomment-931886013
A couple of annotations didn't end up in the GAF file because they on pseudogenes: SPCC553.05c/wtf6 and SPCC285.06…