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Tried to implement sns RNA-Seq pipeline but the `SnsWESAnalysisOutput` class (from [here](https://github.com/NYU-Molecular-Pathology/sns_classes)) has issues with compatibility, due to validation and …
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Describe the bug
When launching a new job, it appears at the bottom of the history.
Galaxy Version and/or server at which you observed the bug
Galaxy Version: 21.09 (usegalaxy.org).
To Reprod…
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Dear all,
In the default config file ptx.cfg. There is one line _--ref-cluster %bin%/../data/cds-nr98-core.fa_
Is it mean using the cds-nr98-core.fa as the reference for reads extracting or cp ass…
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# Design (@brianraymor)
## obs
...
### modality
Key
modality
Annotator
Curator MUST annotate.
Value
categorical wit…
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Attached is some background reading on Principal Components Analysis (PCA) and RNA-Sequencing.
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Hello! I am very interested in the approach developed by your team, but after reading the available materials, several questions remain:
1) The results of correction of yeast data were given as an e…
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Context: https://github.com/AlexsLemonade/OpenPBTA-analysis/issues/251#issuecomment-570622668
Multiple analyses including many (all?) of the molecular subtyping tickets and the OncoPrint plotting r…
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**Is your feature request related to a problem? Please describe.**
Embeddable views of Cell Ranger HTML summary page on GigaDB. Cell Ranger is a set of analysis pipelines developed by 10X Genomics th…
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i'm a newbie to sequencing analysis & working on a pooled sample project for the first time. i've found [this slide deck](https://yeamanlab.weebly.com/uploads/5/7/9/5/57959825/snp_calling_pipeline.pd…
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Hello,
Can you please tell me from where I can download this data:
i) Gene expression data: All_Tissue_Site_Details_Analysis.combined.rpkm.gct
ii) Phenotype data: phs000424.v6.pht002742.v6.p1.c1.…