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I'd like to use the `integrate_ChIP_RNA()` function to find the targets of my TF of interest. I have the RNA-seq differential gene expression result (TF inhibitor drug vs. vehicle control RNA-seq data…
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### Operating System
Other Linux (please specify below)
### Other Linux
Rocky Linux release 8.9
### Workflow Version
v1.2.1
### Workflow Execution
Command line (Cluster)
### Other workflow exe…
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Transcript factor activity analysis
Give a SE object and a DEA:
```{r}
library(plgINS)
data(regulon.curated.mm)
regulon
plger updated
5 years ago
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I realized that I will be working with a very large number of samples representing data from over 20 conditions. The paper mentions - "PsiCLASS is designed to leverage the gene information across samp…
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Hi,
Im trying to look at differential expression between two knots, ideally at the point where the five lineages diverge using `earlyDERes
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When using SymPy's `replace` method with `WildFunction` and `Wild` symbols in **definite integrals**, function arguments are sometimes replaced with `_0`, leading to incorrect substitutions. This issu…
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Hello,
I am trying to run differential expression between Tumor and Tcells LR pairs but am getting
`Error: order should contain names of all sectors`
![Screen Shot 2020-05-06 at 5 36 46 PM](ht…
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Hi,
I am using ballgown for differential expression to data from Stringtie, but by just loading the data by this command
bg = ballgown(dataDir = "ballgown", samplePattern = "RNAseq", pData=pheno…
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I randomised the cell types by `allHuman$cellTypeRandom
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Just wondering if it is possible to run dekupl with one sample per condition (or one sample versus many?). e.g. so we can find novel transcripts in a cancer sample versus normals. I have tried using d…