Transipedia dekupl-run issues

Transipedia / dekupl-run

Identify differentially expressed k-mers between RNA-Seq datasets

MIT License

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issues

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Bug in reverse complementation of FASTQ files

#73 dcansugurer opened 4 months ago
0
segfault in joinCounts

#72 timodonnell opened 3 years ago
3
Crash during DESeq2_diff_method.R

#71 bortoliniandre opened 3 years ago
1
Job exited with out of memory error during the final stage of the run (99% done)

#70 genutis opened 4 years ago
5
# VALIDATE sample names issue in Snakefile

#69 DenisTEMPE opened 4 years ago
3
Change in parameters

#68 dgautheret closed 4 years ago
1
Processing one sample versus many

#67 nadiadavidson opened 4 years ago
2
R scripts and library dependency

#66 leclercfl opened 4 years ago
0
Limma voom for kmers

#65 MarineAGLAVE closed 5 years ago
4
Correction of contrast in DESeq2 and Limma-voom

#64 MarineAGLAVE closed 5 years ago
2
Correction_normalized_counts

#63 MarineAGLAVE closed 5 years ago
1
Limma-voom error

#62 MarineAGLAVE opened 5 years ago
0
seed fixed for shuffle before DESeq2

#61 MarineAGLAVE closed 5 years ago
7
modification about nb_threads parameter in README

#60 MarineAGLAVE closed 5 years ago
1
correction of inconsistency between documentation and Snakemake file

#59 MarineAGLAVE closed 5 years ago
0
inconsistency between documentation & snakemake file

#58 leclercfl closed 5 years ago
2
miniconda install error

#57 leclercfl opened 5 years ago
0
/dekupl/dekupl_tmp error

#56 mndavies286 opened 5 years ago
3
Fastq file nomenclature

#55 mndavies286 closed 5 years ago
6
Changing default TMP_DIR location

#54 jaudoux opened 5 years ago
0
make sure `sort` uses specified temp directory, refs #52

#53 amirkdv closed 5 years ago
1
Sort does not use specified temp directory

#52 amirkdv closed 5 years ago
1
Update FTP URL for Gencode data, fixes #50

#51 amirkdv closed 5 years ago
3
Gencode data has moved

#50 amirkdv closed 5 years ago
2
Add gitlab-ci and conda build job

#49 dimitrilarue closed 5 years ago
0
Fix/remove rpy2 dependancy

#48 jaudoux closed 5 years ago
0
refactor: update conda dep jellyfish

#47 dimitrilarue closed 5 years ago
0
update conda recipe

#46 dimitrilarue closed 5 years ago
0
Add conda recipe

#45 dimitrilarue closed 5 years ago
0
[Bug] sample_condition_full.tsv was not tabulated

#44 jaudoux closed 5 years ago
0
fix(DESeq2_diff_method.R): type error which happens in some R version

#43 abdouStn opened 6 years ago
0
Fixing missing snakemake in dockerfile and update singularity doc

#42 dimitrilarue closed 6 years ago
0
Fix/remove rpy2 dependancy

#41 jaudoux closed 6 years ago
0
Add dockerfile, singularity instructions and travis docker delivery

#40 dimitrilarue closed 6 years ago
0
Fix/transcript gene mapping

#39 jaudoux closed 6 years ago
0
Annotation file

#38 hetica closed 6 years ago
1
Fix/deseq2 diff method

#37 jaudoux closed 6 years ago
0
Remove unecessary -e option that makes travis unhappy

#36 jaudoux closed 6 years ago
0
Fix/deseq2 diff method

#35 jaudoux closed 6 years ago
0
Travis integration

#34 jaudoux closed 6 years ago
0
Add two missing R libraries to README

#33 mikael-s closed 6 years ago
1
add "boost" in README.md dependencies

#32 clairetn closed 6 years ago
1
Replace computeNF R script with C implementation

#31 jaudoux closed 6 years ago
0
modify Snakefile and add option in conf file to run dekupl on ensembl…

#30 sebriq opened 6 years ago
1
dekupl-run docker hangs at test_diff_counts

#29 samleenz closed 6 years ago
1
- prevent R to change the column name (when path is included)

#28 mgabriel01 closed 6 years ago
0
Using Kallisto with other reference species

#27 rnaraine closed 6 years ago
1
MIT License

#26 Edmri closed 6 years ago
0
MIT License

#25 Edmri closed 6 years ago
0
MIT License

#24 Edmri closed 6 years ago
0