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Hi, I was wondering if the gtdb reps 220 had been sketched (or is about to be)? Otherwise, would it be possible to provide/point to the command you use to do it? I imagine it's fairly straightforward,…
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Hi,
I have BLASTed my data against the Megares database and got lots of hits corresponding to the beta-lactamase CTX gene. Since in most of the samples this gene was not expected to be found, I scann…
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I am interested in using RefSeq as a Kraken database and supplementing it with sequences from Genbank. If there are multiple sequences from closely related organisms in the database, will kraken have …
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### Top-level intent
Clone database running on MariaDB 10.11 + Galera 26.4.18
### Steps to reproduce
```bash
echo "create database clone;" | mysql -BN
mysqldump --single-transaction --a…
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## Dataset information
- **Dataset name:** Basic Local Alignment Sequences Tool (BLAST) Databases
- **Dataset state:**
- [x] "CAR generation complete"
- [ ] Something else
- **Yo…
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When I used RepeatModeler, the Round-1 phase encountered an error in the search engine, but the Round-2 phase worked correctly. Here are my code and errors :
RepeatModeler -database /home/PMO/DB1/P…
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when I build nr database ,the error:
```
$ kraken2-build --build --db ~/software/metadb
Creating sequence ID to taxonomy ID map (step 1)...
No preliminary seqid/taxid mapping files found, aborti…
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Hi,
I was trying to run KEC version 1.1 on an example database. However, the kec exclude command seems to run into an error whenever there is more than one target sequence.
Attached is the small…
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### Contribution guidelines
- [X] I've read the [contribution guidelines](https://github.com/squidfunk/mkdocs-material/blob/master/CONTRIBUTING.md) and wholeheartedly agree
### I've found a bug and …
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## BUG/ERROR report
When loading a GFF with the GFF loader containing only chromosomes, I get a landmark error. Specifying "chromosome" as the "Landmark Type" works.
### System information
Versi…