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Hi Qing,
When I run giremi, I got the following error:
Segmentation fault (core dumped)
If I reduce the number of SNVs to < 1,000, it did not output such error. But if the number of SNVs is greater …
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**Only bug reports!**
When running vg construct (https://github.com/vgteam/vg), the vcflib component checking appears to identify the vcf file as having an incorrect field order. A similar bug has …
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Dear developer:
I try to call Quasispecies with a sam file of average depth 200x, and 100%region have a >20X coverage.
however, I found few reads were filled in the covering regions (my refer…
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hej,
I am trying to run the demo data but it throws me an error in the last steps:
[71/07e145] process > CheckGenome (CheckGenome) …
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It seems impossible to add an `xlab.label` when there are bottom covariates. The covariates also occupy the same space as the xaxis label and covers it, regardless of using `xlab.axis.padding`, `key.b…
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Potential enhancements of Snippy Streamline to be discussed:
- Quality assessment of reference genome (N50, number of contigs, BUSCO) added to Terra outputs
- additional output column that indicat…
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Hello, I had a quick question/clarification re: duplicate miRNA IDs. I noticed in the duplicates matrix there were a large number of miRNAs called duplicates due to the license plate but when you look…
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Using BWA MEM to map WGS reads to metagenomic contigs, it is possible to find no reads mapping to a small number of short contigs. This then results in inferring contig coverages of zero and an inabil…
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I used the strelka to identify germline and somatic mutation for a tumor sample. The StrelkaGermlineWorkflow runs normally, but StrelkaSomaticWorkflowruns an error. The version of strelka is 2.9.10.
…
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Hi，thank you for such an excellent software.
After using bismark to deduplicate bam, I used samtools to sort, and when bam2cgmap bam files of **different samples**, the following problems occurred.…