zhqingit giremi issues - Githubissues

zhqingit / giremi

GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.

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#57 JasminZarah closed 1 year ago
1
[fai_fetch_seq] The sequence "10" not found

#56 JasminZarah opened 1 year ago
0
error while loading shared libraries: libhts.so.1

#55 JiajunQiu opened 3 years ago
0
demo for giremi

#54 huangl07 opened 4 years ago
1
there is no results and log after running

#53 Li-ZhiD opened 4 years ago
0
SNV list in an analysis using an inbred mouse with/without drug treatment

#52 tyaoi opened 5 years ago
0
Running problem

#51 JhinAir opened 5 years ago
4
GIREMI executable depends on glibc 2.14

#50 alcharal opened 5 years ago
0
GIREMI stopped working, Rout Error attached

#49 LastGenomeBender closed 5 years ago
0
SNV list: How to get the Giremi input file from the vcf file

#48 mt831 closed 6 years ago
1
Segmentation fault (core dumped)

#47 Li-Michael opened 6 years ago
3
convert the VCF_file into the input_fIle of GIREMI

#46 ajkshdkjahdka opened 6 years ago
0
Error: Can't find snv in SNV list

#45 zambofd opened 6 years ago
2
a problem about mark_snp.py

#44 ajkshdkjahdka opened 6 years ago
1
why don't print SNV in intergenic region

#43 zambofd opened 6 years ago
0
error in R out files

#42 mj163163 opened 6 years ago
1
major_base all N and pvalue_MI all -1

#41 duanyuange opened 6 years ago
0
double free or corruption (!prev): 0x000000000dd4aaa0 ***

#40 yang91 opened 6 years ago
0
Can GIREMI be used in non-mammalian species?

#39 XMaBio opened 6 years ago
2
stack smashing detected

#38 DDoddamani opened 7 years ago
0
Low quantity of RNA editings found

#37 s-a-nersisyan opened 7 years ago
2
Homozygous SNV's

#36 steveners closed 7 years ago
2
Is it possible not to input SNV list?

#35 XMaBio opened 7 years ago
2
Mouse public SNP data

#34 felipeadgr opened 7 years ago
1
Prepare SNV list

#33 dfv closed 7 years ago
0
SNV list strategy for normal and tumor samples

#32 u9090 opened 7 years ago
0
can't find ifRNAE

#31 sunlei0227 opened 7 years ago
0
Publish the sourch code

#30 lipan6461188 opened 7 years ago
0
SNV File Format

#29 carlshotwell opened 7 years ago
2
Interpretation of GIREMI results

#28 ma-diroma opened 7 years ago
4
Allelic depth calculated, but glm & ifRNAE not calculated, MI statistics are off

#27 JohnMCMa closed 7 years ago
10
Segmentation fault (core dumped)

#26 fzhang005 opened 7 years ago
16
STAR mapping + GATK

#25 Angelven opened 7 years ago
5
Error in data.frame

#24 Lsteenhuis closed 7 years ago
4
Question about SNV list

#23 rz2333 opened 7 years ago
4
Not strictly about the code: the LLR test

#22 JohnMCMa opened 7 years ago
0
Mapping

#21 jingyayeah opened 7 years ago
2
repeat snv and cannot find the ifRNAE

#20 hemingwang opened 8 years ago
20
error:Can't find snv in ss!i

#19 jingyayeah opened 8 years ago
3
GIREMI troubleshooting

#18 ghost opened 8 years ago
2
Problems in running a long time

#17 HungerNature opened 8 years ago
1
Segmentation fault

#16 purplerainf closed 8 years ago
8
Problem in file.res.out : dat.pos empty

#15 stoumoi opened 8 years ago
5
Segmentation fault

#14 IraShch opened 8 years ago
8
Segmentation fault (core dumped)

#13 chengeng opened 8 years ago
4
-bash: giremi: cannot execute binary file

#12 HungerNature opened 8 years ago
4
strand in SNV file

#11 msahraeian opened 8 years ago
1
issues with the error while loading shared libraries: libhts.so.1(already set the LD_LIBRARY_PATH)

#10 mengysun opened 8 years ago
10
error:Can't find snv in ss!i

#9 Angelven opened 8 years ago
3
Error while running giremi.r

#8 narangsign closed 8 years ago
4