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Hi @leonardiwagner, i'm still working on the accomplishments however the behaviour of the deployment of its subsections seems to be quite different from other sections. Actually that's what I'm able t…
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New term to make it easy for researchers to find all available docking site insertions
[Term]
name: docking site
namespace: experimental_tool_descriptor
def: "A docking site is an element that h…
gm119 updated
4 years ago
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Hello Jon,
I can run funannotate well now. I still have a question about three repeat database: funannotate.repeats.reformat.fa, funannotate.repeat.proteins.fa.tar.gz, and repeats.dmnd.
I want to us…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/jackgisby/packFinder
Confirm the following by edi…
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In the *.cls.tsv file, the header is listed in the following format. However, in the place of "Order", the true classification should be in the "Subclass" level. For the order level, it probably shoul…
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Back in 2015 these terms were requested(#299 ):
Transposable_element_pseudogene (SO:0001897)
and
transposable_element_CDS (SO:0001896)
Do you think it would be appropriate to have:
transpo…
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For example, I find no mention about paired-end RNA sequencing which is the most common kind these days. Also, what about stranded and unstranded protocols? I have BAM files from TCGA and they happen …
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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
**Describe the bug**
funannotate predict still prob…
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Hi!
I'm facing errors or warnings that the respective files don't exist. My dataset has fastq.gz files, is it necessary to unzip the files? This is the stdout:
```
[bwa_index] Pack FASTA... 0.08 s…
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Both Ensembl and Phytozome strip out all repetitive elements from their annotations. I have been pulling the unmasked references, so I will try detecting similar repeats with the repbase library.