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Hi Rebecca,
thank you sharing your program! I am going through the tutorial and I can't find the tissue_expression_file: data/tissue_expression/GPL570EnsemblGeneExpressionPerTissue_DEPICT20130820_z_…
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Hello:
When I run the Mastermind extension, it adds the comments to the output file in this way and does not add any mastermind information, but fills its columns with "-".
What is this error? How c…
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Dear sir,
I am sorry to bother you in your busy schedule. Does this pipeline apply to other species, or just bees? Could you tell me about it?
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The phenotype section looks a bit like a wall of text, and could benefit from some improvement.
How about slightly darker shading of the phenotype terms (compared to the alleles and expression) or …
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MuTect and VarScan has a threshold setting (`--tumor_f_pretest`) to select sites with at least a certain fraction of non-REF alleles. Something similar is in VarScan (minimum frequency to call an alle…
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We should have a paragraph on prior applications of tHMMs since there are one or two. I would also mention linkage analysis here, and analysis of incomplete penetrance in family trees.
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The 3 mitochondrial organisation from this paper seem to be phenotypes (would cause pleiotropic effects?)
http://amigo.geneontology.org/amigo/reference/PMID:19755423
dmGlut | Dietary and meta…
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* pvactools version: 1.3.7
* Python version: python3.5 -V returns Python 3.5.6, python -V returns Python 2.7.15+
* Operating System: ubuntu 14.04
**Describe the bug**
Executing MHC Class I pre…
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This is one of the curation types to migrate out of Artemis.
~The workflow here might also work for the Rothamstead host pathogen stuff as it requires being able to supply a ID from another organism …
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HI
I got an error when I tried to run HoneyBADGER using the example data:
Request to BioMart web service failed.
The BioMart web service you're accessing may be down.
Check the following URL and…