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## Checklist before submitting the issue:
- [ ] The issue is strongly related to the MiXCR software
- [ ] The issue can be reproduced with [the most recent version](https://github.com/milaborato…
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Hello,I meet a question when I run AA for getting data.
The AmpliconArchitect version is 1.2
my command:
python /home/tang/tools/AmpliconArchitect/src/AmpliconArchitect.py --bed ../NCI-H716_…
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Hi,
I confused in a topic about the CNVkit algorithm.
![image](https://user-images.githubusercontent.com/60985581/123441741-de0f5400-d5dc-11eb-9425-0a5d8b073aae.png)
This picure came from cn…
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Hello,
I noticed that Clair3 is not calling a variant near the end of a short reference sequence (position 2265 of Influenza A virus PB2 sequence [OP597571.1](https://www.ncbi.nlm.nih.gov/nuccore/O…
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Hello,
I have -w 1 and -wc -3, yet substitutions and N's outside the quantification window seem to be counted as edited in the allele frequency table. For example, in the image below, none of the …
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@timrobertson100 @thomasstjerne @cmungall @pieterprovoost @79-6d
Following our meeting today, would you mind scoping out how you'll test exchanging a MIxS TSV for an attempt to auto-convert it int…
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Hi Derrick,
We talked about this topic during 2014 and I know you are working on it. I'm very excited to see you released a new kraken version! I really think kraken could be one of the best solution…
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Hi everyone,
Can I use this workflow for tumor only variant calling to detect both Somatic and Germline variants? Or should I first run my data with Mutect in tumor only mode and then use varlocira…
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Hi I have a simple question about using `dorado trim`
I did an amplicon sequencing run using the EXP-PBC096. The sequencing was run with live base calling using MinKNOW. However, the HTML report sh…
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I am attempting to basecall using dorado, and I had a question regarding which kit I should provide as part of their `--kit-name` flag when using `dorado basecaller`.
In my library preparation, I …