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Hi Dallas,
I've noticed that for the larger CAZy families (say >900 sequences) cazy_extract fails to download all of the unique fasta records from NCBI, but rather downloads multiple copies of the …
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I just found out that MOOSE is able to handle cascades in "top" openers. I'm not sure if it can do it in "sub" blocks, but I see no reason why it shouldn't. Basically, MOOSE thinks these blocks are th…
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Hi,
Funannotate predict and funannotate annotate have been done successfully for 3 genomes.
However, when I run funannotate compare, I got the following error.
Could you please suggest what t…
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Hi, I don't know how to debug this right now. However, opening a file with the gui --rofi not always open the correct paper (both for edit/show file) while the vim GUI for the same entries open the co…
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This looks all great and I am just about to get it going. Before that though I was wondering if it is possible to add another custom column to the functional_annotation.txt e.g. Cazy, merops or a made…
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I'm getting this issue after run `grunt exec:`, this shows up:
```
Processed Area: frontend, Locale: en_US, Theme: Ids/prueba, File type: less.
>> [Magento\Framework\Exception\FileSystemException] …
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```
~/data/sample_data$ funannotate compare -i genome1 genome2
-------------------------------------------------------
[06:07:05 PM]: OS: linux2, 4 cores, ~ 4 GB RAM. Python: 2.7.12
[06:07:06 PM]:…
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Hello. Having an issue with `atlas assemble` on Ubuntu 16.04. Dependencies have been installed and using atlas_env.
`atlas assemble mgm4637809.3.yaml`
...
`subprocess.CalledProcessError: Command …
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Hi,
first of all, thanks. Nextflow works like a charm and made our life a lot easier.
Now my question is: how can I avoid this error ?
```
ERROR ~ Error executing process > 'getFasta'
Caused by:
…
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I contacted the CAZy folks about how to build an annotation database. They recommended using UniProt. One can download the equivalent FASTA file here:
http://www.uniprot.org/uniprot/?query=database:%…