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It would be appreciated if the documentation explicitly mentioned that `rownames` of the input matrixes need to be gene symbols and not other annotations. Took me a while to figure out that `LISA` req…
bc2zb updated
3 years ago
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```
jovyan@jupyter-dfci-2dcellbox-2d7985pt7y:~$ python scripts/main.py -config=configs/Example.random_partition.json
WARNING: Logging before flag parsing goes to stderr.
W0206 06:36:49.652899 13971…
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I used the following command to create a Snakefile following the instructions at https://github.com/liulab-dfci/MAESTRO/blob/master/example/RNA_infrastructure_10x/RNA_infrastructure_10x.md.
Unfortu…
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Hello,
I am able to run the example script without specifying -t, but when I try to run it with -t=4, the program freezes after the read extraction is complete (I allocated 4 cores when running the…
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Try e.g. https://genie-private.cbioportal.org/patient/summary?studyId=nsclc_genie_bpc&sampleId=GENIE-DFCI-011116-116358
inodb updated
3 years ago
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install MAESTRO in gizmo? It is a software for single cell data processing.
The git hub page is: https://github.com/liulab-dfci/MAESTRO
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Hello Heng,
I'm looking at the example 20-sample human rGFA you shared on the FTP site (ftp://ftp.dfci.harvard.edu/pub/hli/minigraph), and guessed that in general the rank of segments is the order …
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Dear Tao,
When I ran install_github("liulab-dfci/MAESTRO"), I encountered the below error. Have you ever encountered the same error?
Error: Failed to install 'unknown package' from GitHub:
Fai…
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Hi Arang,
I evaluated two NA12878 haplotype-aware assemblies by pre-built meryl dbs(from [here](https://obj.umiacs.umd.edu/marbl_publications/merqury/index.html)) and all metrics are fine except…