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How do we begin annotating the microbial taxonomy with morphological and physiological properties? For example:
* [obligate aerobes](https://en.wikipedia.org/wiki/Obligate_aerobe)
* [facultative ana…
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Hi, I have trouble when using --Q2imported.
The value for --Q2imported is demux.qza that generated from --untilQ2import.
```
The error message is Invalid characters in sequence: ['a', 'e', 'f', …
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Dear Dr. Callahan,
I ran DADA2 on a big data set (700 samples with over 63 million reads) but the parameter (pool = TRUE or FALSE in dada function) confused me a lot.
Here are my questions:
1. …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/zoecastillo/microbiomeExplorer
Confirm the follow…
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Hi,
I was wondering how you recommend the reference metagenome file be generated when doing the 'generate current differences' step for metagenomic binning. Can the metagenomic contigs for my sampl…
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Our Kickoff Meeting is October 26th, 15-17 CET
Minutes document: https://docs.google.com/document/d/1k8daES74rpeFK9roQDGWxotEPHURto-fYZBJlpIFZ8k/edit?usp=sharing
# Agenda
- Welcome
- Scope o…
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### The Problem
The currently used program for pathway analysis `gprofiler` can't handle bacteria in general and applies only to isolates, i.e. a single species opposed to metatranscriptomics.
#…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/FrederickHuangLin/ANCOMBC
Confirm the following b…
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From log
```
Jun-25 10:22:14.450 [main] DEBUG nextflow.Session - Workflow process names [dsl1]: library_merge, genotyping_hc, output_documentation, nuclear_contamination, makeFastaIndex, convertBam,…
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As I've found out, all R1 sequences must be of the same length. R2 too. Is it necessary to have sequences in R2 files synchonized with sequences in R1 file (same number and order)? If I trim all R1 fi…