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Hello,
I am trying to run MetaMaps to classify Nanopore reads that I know originate from a mix of four genomes. I built a custom database with these four (unpublished) genomes:
```
perl /Users/jf…
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**UniProt UniRule (ID and label):**
GO:0032968 | positive regulation of transcription elongation from RNA polymerase II promoter | IEA with UR00063877
**Sequences with problematic annotation (ID…
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Reactome
http://amigo.geneontology.org/amigo/gene_product/UniProtKB:P62979
http://amigo.geneontology.org/amigo/gene_product/UniProtKB:P62987
About 90 annotations for both spanning many processe…
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Hello I recently installed genomad v1.8.0. However, when I tried to run the command, it return an error below.
(genomadv1.8.0) dostvip2@DESKTOP-L5H6T8M:/mnt/f/Klebsiella$ genomad end-to-end 09_MOB…
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Mam33 is a mitochondrial protein involved in ribosome assembly.
Off-target annotations include:
UniProtKB:O94675 | SPBC776.07 | enables | GO:0003714 transcription corepressor activity | ECO…
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An example from the most recent annotation run:
7010 | C | T | missense | QX1410.4943 | QX1410.4943.1 | protein_coding | - | 680M>680I | 7010C>T | QG3923 | 1 | 10 | 286.92*
-- | -- | -- | -- | -- …
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Reported as a taxon constraint prediction inconsistency https://github.com/geneontology/go-ontology/issues/16298#issuecomment-921962141
GO:0030312
We propose to move GO:0062039 biofilm matrix up t…
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Hi Thang,
I ran iq package and diann package to deal with a DIANN result (report.tsv).
- For iq package, I followed the pipeline described here [https://cran.r-project.org/web/packages/iq/vignet…
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Related to #46 I was thinking:
+ Should we move some of the functionality to map ranges within proteins to the genome to `ensembldb`? Somehow that would make sense, since all the data is there and al…
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This doesn't seem quite right
The KDEL receptor, when mutated activates the UPR (likely due to loss of resident ER proteins)