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There are quite a few transcripts annotated as 'ncRNA'. However according to the ID mapping, it seems they could be annotated further as tRNA, rRNA etc.
```
$ zcat homo_sapiens.GRCh38.gff3.gz | g…
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Testing on macOS installed from git, using Python 3.6.4 from Anaconda,
```
$ python3 test_Entrez_online.py
...
======================================================================
FAIL: test_…
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The following error repeats many times:
`Warning: [blastn] Taxonomy name lookup from taxid requires installation of taxdb database with ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz`
this is ha…
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Hi:)
I ran kraken2.1.2 for my mice gut microbiome shotgun metagenomic analysis. I built a custom db by using the following command
```
kraken2-build --download-taxonomy --db refseq
kraken2-build …
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### Description of feature
Hi,
This is probably related to issue https://github.com/nf-core/viralrecon/issues/113#issuecomment-1034362913
We are trying to shift from a detection of solely Sar…
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Hi,
I was wondering if it would be possible to provide a filtering option based on assembly (species/assigned) name? I often want to pull a group of microbes with a general metabolic capabilities (…
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We are considering switching from using the name in the target_pathogen column as the uploaded value to using the NCBI Taxonomy ID. However, we are not ready to do this yet as we first need to look u…
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Hi there,
I wonder what parameter i should set (eg negative_taxids ?) when i am performing blastp against protein databases, if i would like to filter out all prokaryotic blasting results, as i am …
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**API Error Message**
`{"BillSeries":null,"BillNo":0,"Billid":0,"ErrorStatus":1,"Message":"Tax(null)n Bill Doesnt match with Tax(null)n Master:: Message from [PROC_MOBPOS_SaveBill]"}`
**Input JS…
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Create Input_to_selection module to be able to add the selections plus datahubs to the system. This has to have two modes:
1) automated mode: look for taxid+datahub rule to add the selection to pro…