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After #1371 (compact De Bruijn graph work) and #1372 etc. (assembly), can we now input/output [FASTG](http://fastg.sourceforge.net/) or [GFA](https://lh3.github.io/2014/07/19/a-proposal-of-the-grapica…
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I installed [dotnet preview 9](https://dotnet.microsoft.com/en-us/download/dotnet/9.0) and with `DOTNET_ROLL_FORWARD_TO_PRERELEASE=1` I'm getting this error during build.
```
Using "WebShar…
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Right now, render contains some structs that don't separate responsibilities:
- Atoms (this is good, it just stores a handle to a gpu buffer of atom data)
- Fragment (Roughly speaking, this represen…
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Hi,
I have a human genome that has a ~28 Mbp inverted duplication (invdup) on one of the haplotypes. This invdup region exists 3 times in the genome: once on the paternal chromosome, twice on the m…
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Dear developers,
Thank you for developing this excellent tool!
### Test Data
- the assembly graph file: [snp.graph.gfa.txt](https://github.com/maickrau/GraphAligner/files/10914521/snp.graph.gf…
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With NGL as the viewer it is now very easy to create some buttons to toggle visualisations. We need to decide what are important things to add. I'd propose:
- toggle side-chains as sticks in interface…
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I've recently installed finishm and am getting the following error when running roundup. Any help would be appreciated! I have Ruby 2.3.
```
>finishm roundup --genomes geno …
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Hi,
Log:
```
See the end of this message for details on invoking
just-in-time (JIT) debugging instead of this dialog box.
************** Exception Text **************
Microsoft.Graph.Beta…
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I'm curious if miniasm works for the assembly of multiple high-quality sequences. For instance, the GRCh38 ALTs that are being used in the graph challenge in the ga4gh.
So, we tried to assemble some …
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dlhg updated
11 months ago