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PyStan 2 is not supported, we need to move to PyStan 3, but backwards-incompatible changes were introduced in PyStan 3.
**PyStan 3**
- Data and random seed are provided earlier, to the `build` m…
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Hi
Thanks for the great method/package. Will it be possible to report the per-SNP BFs (for each single effect) using e.g.
s$snplbf[l,]
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Thank you very much for this amazing tool SusieR. I exported the lbf_variable matrix. However, I found very large values (>10,000) in this matrix.
 branch tries to:
```
- allow python 3.6-3.9 in setup.cfg
- use dev-ssciwr branch of pbiotools
- temporarily add all…
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**Submitting author:** @wrightaprilm (April Wright)
**Repository:** https://github.com/wrightaprilm/treesiftr
**Version:** v1.0.0
**Editor:** @juanklopper
**Reviewer:** @ethanwhite, @rachelss
**Archiv…
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In [Section 3.4.1](https://www.roboticsbook.org/S34_vacuum_perception.html#inference-in-bayes-nets), the Bayes Net indicates the conditional $P(W | X, \textbf{Z}) $ whereas the table describing the po…
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Hi,
When using the same data in MEME, but different test branches (about half of the tree vs. 4 branches), beta (but not alpha) is uncorrelated between the same amino acid positions. Is this becaus…
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Hi,
I'm getting an error while the data is read:
```
#
# =============================================================================================================================
_____ _…
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**Description**
After this commit https://github.com/dieterich-lab/rp-bp/commit/8e9799a350c403244e61b5c1800f180caf3e1ed6, tests failed, while they succeeded locally. However, we're currently using bo…