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Dear INNUCA team,
Is it possible to run INNUCA for other species than the one listed in the below modules?
https://github.com/B-UMMI/INNUca/tree/master/modules/trueCoverage_rematch
[campylobact…
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Hello,
Thank you for writing this very useful program. I hope you can help me with this problem. I see other issues about this error but I haven't gotten it to work.
I ran minimap2 on reference.…
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The fasta sequence names in metadata file, alignment, and nwk are exactly the same. However, treetime still shows the following error? I ran mafft to get nwk file.
#Error
treetime --tree fastt…
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(bohra) [vsingh@vdl]$ bohra run -p full -i isolates.tab -r ./NC_012925.1.fasta.gz
[INFO:06/21/2023 11:52:12 AM] Bohra is being run in /home/vsingh/vdl/Ssuis/ by vsingh on 2023-06-21.
[INFO:06/21/…
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@ngraef
I'm adding an example response to one of my Get Routes like so:
```ts
@Response(200, "Response example", "example String here")
```
However when debugging swaggerGen, I get the followin…
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Hi,
I want to know if foldseek can output multiple structural alignment generated using 3Di as aligned 3Di alphabet sequences in Fasta format and not aligned amino acid sequences of the proteins.…
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singularity exec --bind /home/eniac/madhu_mito/:/home/eniac/madhu_mito docker://ghcr.io/marcelauliano/mitohifi:master mitohifi.py -r /home/eniac/madhu_mito/A5_mitochondria_genome.fastq -f /home/eniac…
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### Context
The `NCBIWWW` module contains functions that aid querying NCBI's native BLAST server and its associated services.
During my own usage of this tool, I found myself waiting "_long_" re…
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Thanks for developing this tool -- I am eager to try it out.
Now, it seems that a taxonomy database is a requirement for laca init. Would it be possible to clarify the format of this database (e.g.…
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Hi @aganezov,
I'm trying to merge two assemblies resulted from different settings with Supernova. Since I have fasta file I think I have to convert them in point formatted file by running `fasta2ca…