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### Description of feature
GitHub: https://github.com/CSU-KangHu/HiTE
- Visibility, @yykaya
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Hello,
I am currently facing an issue with extremely high memory usage while building a Kraken2 database with around 400GB of genomes. When using a 31-mer size, the database construction seems to r…
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Hello, thank you for providing such a useful tool. I installed EDTA using conda, and when running the test data, I encountered the following ERROR:
`mamba create -n EDTA
conda activate EDTA
mamba…
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When I use concatenate.regions(GENOME.class), because the data is too large, the program uses the bigmemory package. Afterwards, when I execute GENOME.class
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Hi,
Since bactopia has such a comprehensive toolset (both as part of a workflow, or separate modules and tools), I wondered if a transcriptome workflow would could be added if even realistic?
I'…
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Here's an example giving a maximum value of infinity in the returned matrix:
```python
L = 10e6 # 10 Mb
params = {"sequence_length": L, "population_size":1e4, "recombination_rate": 1e-8, "random…
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**CHM13V2 T2T Assembly**
```bash
wget https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/914/755/GCF_009914755.1_T2T-CHM13v2.0/GCF_009914755.1_T2T-CHM13v2.0_genomic.fna.gz
snipe sketch --ref GCF_00…
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Can I use cactus to compare multiple Poaceae plant genomes? These genomes include diploids, tetraploids, hexaploids, and how does cactus perform in this complex comparison? Is the final calculated phy…
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**Describe the bug**
`Illegal instruction (core dumped)` errors when trying to view any alignments with the same args (`$ gw -b input.bam refs.fasta -r "$ACCESSION"`) as used with gw v1.0.0.
**T…
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Hi,
I am working on finding out the differential m6A modification in between control and drought samples with 3 repllicates.
I have used genome.fa in alignment and also in eventalign using nanopo…