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Dear team,
I'm a little bit confused about the build index step. The manual says that it builds a transcriptome index but needs as input a genomic fasta and a gff. I would like to create the count…
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I found the color key range is always from -2 to 4. However, the copy number range of my data is from -1 to 2. How can I customize the range of color key? Many thanks in advance!
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Hi, when running SubPhaser i get the following error:
```
Traceback (most recent call last):
File "/home/531734/.conda/envs/SubPhaser/bin/subphaser", line 33, in
sys.exit(load_entry_point…
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Hello,
Thank you for maintaining the useful tools.
I encountered an error when I ran RepeatModeler to generate species-specific library for masking a de novo assembly.
**Describe the bug**
The…
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Hello,
I've been trying to run amplicon architect for several days now but the run reaches a certain point and does not progress further without giving any errors or terminating. I am running it …
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I have several done files (in alphabetical order: fastqs, remapping, retagging, variants, and vartrix) so think I'm stuck at the clustering stage (also as clusters_tmp.tsv is 0 bytes)
```
the web …
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Using the app itself as an interface should be self-explanatory. What is not self-explanatory is what the biological meaning behind all of the app's functionality is. @ajlee21 Suggested a while ago th…
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Dear developer,
I have installed vdsearch. However, I faced this issue while running $ "vdsearch --help".
Error:
```
Traceback (most recent call last):
File "/home/chong/miniconda3/bin/v…
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Hi,
I have written a tool called pharokka (https://github.com/gbouras13/pharokka) that annotates bacteriophage genomes. Pharokka uses mmseqs2 to match predicted CDS to the PHROGs (https://phrogs.lm…
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# Binning with CONCOCT
What makes CONCOCT an unsupervised binner is that it bins based on the characteristics of the sequences (sequence composition) and coverage information. Tetranucleotide freque…