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Hi:
Hi Botond,I'm having an issue which is similar to #1
But the error message is not exactly the same with that. Because my sample names has letter prefixes.
Here are my **error messages**:
```…
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i.e. bcftools clustering is X% (or whatever metric) similar to the clustering produced by compass
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Hello!
Thank you for your tool and package. I am trying to generate a de novo_ gneome with canu before moving to complete Trio-binning with paired 10X linked reads. I have been working with canu t…
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Hello,
Could someone fix the link about what data files are required from gisaid for covidcg to work. there is a link on the data requirements (https://github.com/vector-engineering/covidcg#Data-Requ…
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Hello,
Our lab are completely new to MinIon sequencing and have no experience of analysing the data it produces. I am trying to assess methylation of a known DNA motif using megalodon. I have, main…
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Hi @m-bull ! Hope you are well. I was wondering whether you think it would be worthwhile adding this workflow as an extension to the [nf-core/nanoseq](https://github.com/nf-core/nanoseq) pipeline? I…
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In the update call on Monday, Simon raised a **very** interesting question that I think will give this work another novel component.
The question effectively boils down to
> If I have a collect…
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I am attempting to use Racon within the pipeline-pinfish-analysis Snakefile but the workflow fails at the point of polishing the transcripts. The sdtout file suggests that the issue is with Racon.
…
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Hi,
I am trying to use bactopia with 2 samples (i have qc-ed llumina and nanopore fastq so I am using the hybrid assembly option here) but keeps exiting with an error during the assembly step. The …
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Hi,
I've been trying to run the sigmap code over a number of samples. I first took some data of my own to test using sigmap with default parameters.
A small number of pass reads were mapped usin…