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Hi all,
I am planning to use Coloc for identifying shared genetic signals for two EQTL-GWAS studies.
Given that the reference genome used in EQTL data is GRCh38, while many GWAS data use GRCh37…
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### Description of feature
Dear team,
Sometimes, we don’t have a genome.fasta + gene.gff3 but only have transcriptome assemblies. Could you add a new feature to allow genepal to annotate transcrip…
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Hi, there:
I found that the l**east significant P-value** of your example data mr_dat$**exp_df** is 4.2308e-09. Does this means that all SNPs included in exp_df must be genome-wide significant?
…
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Combine all the output of QUAST, BUSCO and AGAT, as well as the tree in newick format from Orthofinder (ORTHOFINDER_GO)
Use the script in the additional script folder (R) to produce a plot with the…
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### Description of the issue:
It seems that in [2021](http://sgd-archive.yeastgenome.org/sequence/S288C_reference/orf_protein/), S. cerevisiae reference genome in SGD has been updated. The last one w…
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Hello,
I am getting an error in this particular process. The example data ran successfully but this error pops up when I use my genome assembly.
Best,
B
```
Error executing process > 'egapx…
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how is the alignment between two genes represented
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# Tell us what you are trying to do
With the increasing use of whole genome sequencing, we are now able to extract the identities not only of the sequenced individual but also its parasites (or host…
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Hello,
I have my own dataset of about ~1500 references that I want to train the genus model on. I have simulated reads for them individually and now at the .tfrec creation step. My question is, do I …
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Dear author, I have a question about how to succeed my analysis. I make a directory named "deduce" and download three genomes from NCBI. Then, I entered the following command, but it did not work cor…