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I ran mosdepth twice on the same WES samples and got different coverage values. I used the same exome intervals bed file and reference genome build (hg38). There version of mosdepth used was different…
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Hello
I aligned my HiC data on reference using Bowties. Then I used hic-qc but I get the following error:
(base) user@fl017:.../project/qaafi-cnafs/bowtie2-master> hic_qc.py -b align.bam -n 1750…
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### Description of the bug
Running the Sarek pipeline while using Singularity results in the following error: bwa: error while loading shared lib. This issue occurs occasionally when running bwa to…
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We need to figure out the plan how we scientifically validate the data we produce.
@xyg123 could you please add the summary we discussed yesterday?
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### Description of the bug
Hello again!
After solving previous problems https://github.com/DIncalciLab/samurai/issues/19 I rerun the pipeline but after a while I'm getting a new error related w…
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The pipeline run with the complete human dataset in star/hisat2 mode showed an error related to the QC step subreadfeaturecounts:
![Screenshot from 2022-01-27 11-21-04](https://user-images.githubuser…
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This is to discuss the work that will need to be done to update 'has input', 'has output', and 'transports or maintains localization of' in GO-CAM models to 'has primary input' and 'has primary output…
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In GitLab by @ManavalanG on Apr 6, 2021, 08:45
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### Related problem
My entire pipeline runs, when I haven't yet QC'd the first derivative!
### Proposed feature
A config option that enables pausing after a given analysis stage.
### Acceptance cr…
gkiar updated
2 years ago
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Various members of the science team have expressed displeasure working with the webm movies that automatically get produced as a part of our motion correction pipeline. See, for instance
https://gith…