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Hello!
I'm running into the following error when trying to run get_DE_info
Error in muscat::pbDS(pb, method = de_method_oi, design = design, contrast = contrast, : Specified filtering options re…
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### Installation Type
Standalone
### pVACtools Version / Docker Image
4.0.8
### Python Version
3.10
### Operating System
Ubuntu 22.04
### Describe the bug
Full warning message:
```
/usr/loc…
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Implement the biomarker search API
* init service
* Simple search categories
* BEST Biomarker Role
* Advanced search
* Specimen
* LOINC code
* Assessed entity type
* Biomarke…
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### Need
As a clinician I need to be able to detect the IGH::DUX4 SV reliably in all affected samples so I can reliably call it.
This event is generally missed
### Suggested approach
Add the samtool…
fevac updated
7 months ago
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This issue will collect all feedback submitted via the feedback form at the end of each tutorial
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Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…
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I have a question for the Lilac software team:
I am not entirely sure, but could the issue I am experiencing be due to the relatively few variations in the MHC region of the downloaded GermlineHetP…
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Hi, I have been trying to run antigen garnish for a while with your testdata and now it seems to run fine with parallel and netMHC. The issue is that in the folder as e.g. ag_f236b988a09e438ea2 it doe…
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### Description of the bug
Hello, I am a new user (both in Nextflow and oncoanalyser) and was wondering if you could help me with this error - it seems that the tools being called by the pipeline (li…
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Verification Required:
Script doesn't download audio files for contentable type: audio
It also doesn't download attached files from pages where you have text and then attached files at the botto…
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Original GSF model in @mercifr1's paper had provisions for negative time / time before treatment. It might be worth us adding support for this. Currently we only support time from first dose.