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Hi Brian,
I would like to ask you about the file xxx.sqlite.failed_blat_alignments.gtf mainly contains what types of genes(Specifically, what tagged genes can't be matched here) after the first step …
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I am using a swahilli corpus that already has a pretrained acoustic model and dictionary from mfa.
(mfa_env) C:\Users\user\Downloads\ALL>mfa align C:\Users\user\Downloads\ALL\dev C:\Users\user\Downl…
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Apologies, I know this isn't being actively maintained, but I'm hoping for some help. At present, PASA seems to be performing better for large non-model genomes than alternative tools.
In order to …
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Hi, I am trying to run it in a directory with multiple alignments but got this error when using *.phy in the path, even with the example files
modelrevelator_cli.py: error: unrecognized arguments: …
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According https://silverbullet.md/Markdown/Extensions I would expect tables [alignment ](https://www.markdownguide.org/extended-syntax/#alignment) to be supported by SilverBullet but it looks like the…
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I trying to get indecies for words subtituted, inserted and deleted I found the alignments.alignment_chunk and seems not bad but it always give index depand on hypo text.
for example
if the referan…
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Add the alignment strand to the alignments.tsv and summary.tsv
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## Platform
- SeqAn version: 3.3.0
- Operating system:
> Linux bpb23-acc 5.4.0-136-generic #153-Ubuntu SMP Thu Nov 24 15:56:58 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
- Compiler: x86_…
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Dear all,
I have a short question about what the colors in alignments mean.
![image](https://github.com/igvteam/igv/assets/23337193/c0804d75-5db9-4657-ae47-9439a929bb28)
there are the grey read…
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There's currently a `QualifierAlignment` option in ClangFormat, although I'd argue it is misnamed ; it doesn't align anything, it simply order qualifiers.
Currently, I believe that if you write :
…