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Hi,
I want to ask about the input read count value? Should I simply give the raw allele-specific read count? Or should I normalize (for library size differences) the raw count by myself and then ru…
ghost updated
4 years ago
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@vincerubinetti I think these would be good to have before the website goes live
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Hi, I'm new to pyclone and I would like to use it to inferring AML clonal architecture from tumor-only targeted DNA sequencing samples.
I'm not sure how to get information about major and minor c…
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**[Original report](https://bitbucket.org/whatshap/whatshap/issue/169) by Irantzu A (Bitbucket: [iraun](https://bitbucket.org/iraun), ).**
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Is it possible to …
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Hello,
Could you point me to a proper VCF to do snp-pileup on WGS for mm10/GRCm38?
I downloaded [00-All.vcf.gz](https://ftp.ncbi.nih.gov/snp/organisms/archive/mouse_10090/VCF/00-All.vcf.gz) but …
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Hello!
I was wondering How I can answer this question from either PhylogicNDT out or ABSOLUTE output:
For a particular mutation, what is the mutant allele copy number and what is the total copy …
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Hi Arthur,
Thank you for this nice tool!!
I used modkit to call 5mC methylation at reference CpG sites! The command I used is below. (version mod_kit 0.3.2)
`modkit pileup --cpg --ref $ref -…
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Hello!
I have a question regarding the BETA directions in MTAG results when the order of input summary statistics files is swapped. Specifically:
I noticed that when I run MTAG with two trai…
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@manulera
>However, I am not sure variant -> phenotype is the most meaningful link. Probably the user would like to see which alleles give a certain phenotype, rather than what a particular sequen…
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I hope this message finds you well. I am currently working with Cactus and have a specific question regarding the analysis of differences between two haplotypes. Specifically, I am interested in ident…