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1. Create a directory with all trimming reads by city
2. Create the symbol link for genomes y metagenomes
3. Verified anvio installed in server Alnitak
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This iis not a bug with `virsorter` but I thought it might help to document this somewhere. So here I am.
The tool `virsorter_to_anvio.py` uses the output of `anvi-export-gene-calls` (among other f…
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## Short description of the problem
While installing anvio V8 with "pip install" on a conda environment as per the instructions it fails to gunzip the gz file.
## anvi'o version
pip install…
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If ANVIO can pass in the contig lengths then we can filter and only cluster with say contigs > 1000bp. The rest we can still assign to clusters based on responsibilities.
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I’m starting this issue to document problems with the revamped anvi’o interactive interface here for @metehaansever's consideration.
The changes are in the branch `ui-improvements`. If you are usin…
meren updated
3 months ago
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## Short description of the problem
When using anvi-inspect, we cannot visualize SNVs.
## anvi'o version
anvio-dev
## Detailed description of the issue
If you open an inspect page with…
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## The need
When saving an SVG from the interactive interface, we're missing the color scale for any data displayed as "intensity".
A typical example is when we have an ANI heatmap on top of a pa…
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Dear Elaina,
I was following you tutorial on how to import KO annotations into anvi'o (http://merenlab.org/2018/01/17/importing-ghostkoala-annotations/).
I generated user_ko.txt from GhostKOALA,…
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I have a tool with an input of type data and multiple=True:
```
```
I want to create an output collection in a 1:1 fashion against this input dataset list:
```
```
If I use the ui-tab to s…
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## Anvio installation
## anvi'o 8
Keep the header of this section, but replace this text with the output of this command in your terminal:
```
anvi-self-test --version
```
## System …