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In https://github.com/ekg/freebayes/issues/419 @tseemann [asked if vg was ready for bacterial pangenomics](https://github.com/ekg/freebayes/issues/419#issuecomment-377646948). My response better fits …
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Hi All, first wanted to thank you for developing this tool. I work in a lab that currently focuses on pathogenic species of bacteria that are associated with the microbiome of various tumors and are i…
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This issue contains monthly updates to an automatically ranked list of PubMed papers as candidates for curation in the Bioregistry. Papers may be relevant in at least three ways:
(1) as a new prefix…
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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Briefly comment on the issue why you would be interested in this project.
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Hi,
I am trying to run Piggy for a couple of closely related bacterial genomes but the analysis fails during creation of the cluster files with “Cannot open output file: piggy/cluster_intergenic_fil…
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Hello :)
Very nice paper, congratulations.
I've just one question, in the manuscript you stated that you used gapseq to "facilitate the taxonomic and functional identification of core and rare spec…
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Hello guys, how r u? I'm having a problem with step08. I get the following error message:
```
====== starting step08: run fasttree and raxml for tree construction
fasttree time-cost: 1.45 min…
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Briefly comment on this issue why you are interested in this mini-project.