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After finding that the fieldmap generated wednesday 30th was different to the fieldmaps generated as of today friday 1st, I have found the exact commit at which the "before" fieldmap was created - has…
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Please see discussion in [Neurostars #4859](https://neurostars.org/t/n-a-whitematter-confounds-in-tsv-output-file/4859/10).
Summary:
1) ANTs N4 + `fast -N` results in poor segmentation
2) ANTs …
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Use FSSurface with parcelation to create material segmentation of FSAverage scan to white matter, grey matter, CSF, skull, skin, air
FSaverage has brain segmentation, but it seems skin and skull …
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There is a mapping limitation when translating descriptors such as DLPFC (dorsolateral prefrontal cortex) to GIF parcellations. The closest would be orbitofrontal and frontopolar, but DLPFC is a funct…
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Test MONAI implementation of dynUNet on our fetal brain segmentation task to check its performance compared to the nnU-Net framework.
Follow the tutorial: https://github.com/Project-MONAI/tutorials/b…
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Hi,
I am processing a neonatal dataset with the pipeline and the results look really good. However, I was wondering when the cerebellum segmentation/parcellation, and whole brain parcellation will …
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Hi, I'm getting the following error while trying to run the metastases segmentation via docker (nvidia-docker):
```
File loading completed.
('Starting New Case...',)
('Enhancing Mets Prediction'…
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Hi team,
Should we use "PropogateLabelsThroughMask" on the DKT labels to get an accurate volume? the labels incompletely cover some structures such as caudate in this image. Any other processing nece…
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Hey,
I might oversee things here, but I can access some segmentations only when I do task=total or total_mr.
E.g. brain is not visible as a task, however with total as the task flag, I suddenly s…