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There are many issues with the classification of terms highlighted in the image below:
(drawn with OAK and `cl viz -p i --down CL:0000490 CL:0000749 "OFF-bipolar cell" CL:0000573`)
- why is …
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Right now it's hard to document `model_params` and `train_params` because they are simply big dictionaries we copy from notebook to notebook, e.g.:
```
model_params = {
'model_type':'BorzoiPr…
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Hi all,
I was wondering if it's possible to classify cells such that all cells must be assigned a cell-type label (i.e. with no possibility of a cell falling into an "other"/"unassigned" category?)…
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when I run the example of scNym Cell Type Classification with Cell Atlas References. i got somthing wrong, i think there must be something wrong with the model?
![9c4f9243314e47e76b2eca6b083d2fb]…
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fastai 2.7.14
fastcore 1.5.29
**Describe the bug**
When producing some exception from a plain assert, the exception is modified by fastai, but the modify_exception call introduces another error, …
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| | |
| ---- | ---- |
| **Label** | Object Type |
| **Definition** | High-level terms for the classification of curated objects. |
| **Usage** | A more generic classification of items in the col…
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I think the general understanding of CL scope is that terms for cells by state rather than type are out of Scope. Defining what we mean by this can be hard, but it seems clear that classification of …
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Dear Sir
Can you share requriemens.txt file for this project.
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Hi,
this is more of a question than an issue.
I tried this very nice tool on some single cell RNAseq data and provided a list with marker genes for 10 different cell types. There is one cell t…