-
Currently our Single Cell Expression Atlas AnnData files (such as http://ftp.ebi.ac.uk/pub/databases/microarray/data/atlas/sc_experiments/E-MTAB-6077/E-MTAB-6077.project.h5ad) will include multiple cl…
pcm32 updated
2 years ago
-
Dear there,
I am using abstract.html for each dataset, found that it worked on a simple "abstract.html" that I wrote by myself, but never worked when I made a new "abstract.html" by using r markdow…
-
put a simple webapp on top of the `zarr` module that allows viewing (cloud-resident) Zarr (or HDF5) files in the browser
something like [HDFView](https://www.hdfgroup.org/downloads/hdfview/), but w…
-
When running the commands to load the dataset below into seurat in R I get the following error:
Error in `[.data.frame`(feature.names, , gene.column) :
undefined columns selected
Has anyone e…
-
Hello,
I was wondering if there is a lasso tool available instead of the rectangular cell selection tool? Or perhaps an option to rotate the UMAP so the cells of interest could be more precisely se…
shaln updated
2 years ago
-
Hi
I was wondering if there is any way to use/explore spatial data in cell browser? Something similar to Loupe browser if possible
Thanks
-
Would be lovely to resize the two side panels, similar to how the heatmap can be resized.
-
Commonly, collaborators using the cellbrowser request a "split" view to allow them to see cells from different samples/conditions/treatments in separate panes. They want to be able to split the datase…
-
suddenly I have this problem, maybe related to an anndata upgrade. pip says all requirements are satisfied:
scanpy==1.4.3 anndata==0.6.22rc1 umap==0.3.9 numpy==1.16.4 scipy==1.2.1 pandas==0.24.2 sc…
-
I'd like to ask if it would be possible to change the way the data is displayed in the main window.
As far as I know, there are no scRNA-seq data browsers that use 2d bins to show expression data. …