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- [ ] Covid
https://cellxgene.cziscience.com/collections/eb735cc9-d0a7-48fa-b255-db726bf365af
- [ ] Heart
https://cellxgene.cziscience.com/collections/e75342a8-0f3b-4ec5-8ee1-245a23e0f7cb
- [ ] Im…
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Hi, as discussed in our recent meeting, we can work with custom dataloaders within scvi-tools. It requires being a torch DataModule that loads dictionaries of keyword arguments for each mini batch. We…
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I've created a SOMA experiment from around 25 in-house studies, using tiledb_soma's append mode.
I am now looking at ways to visualize the data in a similar fashion to how cellxgene is using the cens…
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Hello VIP team,
I have been tasked by my structure @bag-cnag to make VIP plugging work for cellxgene.
I am sharing the result here, and am offering to contribute it to the repo via a pull reques…
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Context: Reach and build trust with the researcher community
[Project Plan](https://docs.google.com/document/d/1YltB_APsiZ84Z5JiAk94y_geiWG5YrfEChzwdd0zMDs/edit)
[Draft Marketing/Comms Plan](https://…
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Hello,
trying with docker, I ran into
```
$ cd freshlycheckedoutcellxgenegitrepository
$ docker build . -t cellxgene
...
762.0 Downloading s3fs-2022.1.0-py3-none-any.whl (25 kB)
762.5 Colle…
smoe updated
3 months ago
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There are 33 million cells all in CELLxGENE census version 15 May 2023, but only ~22M normal.
![image](https://github.com/user-attachments/assets/5ec611b7-e2f9-4a0b-98a3-253dc028e2bd)
So is it wrong…
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Dear cellxgene-gateway team,
Thanks for your excellent tool, I have a basic question:
If I run a cellxgene gateway on a server, on a h5ad object, it appears that lots of genes are missing compare…
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I wanted to put the following on a slide in the demo deck, but I realize that it's falling short because it doesn't associate labels with features.
https://lamin.ai/laminlabs/cellxgene/artifact/Ntd…
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Dear everyone,
I could not find this information in the https://docs.astral.sh/uv/guides/tools/ documentation. I need to run a specific tool using `uvx` but it requires a specific matplotlib backen…