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Thank you very much for creating amazing resources!
Quick question: do you plan to release phased chromosome X any time soon?
Thanks again!
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Hello! I am having problems with generating my QTLplot.
I have run QTLseq for my sequences and the initial QTLplot from this run has does not have a smooth red line. So I decided to run QTLplot us…
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3.11.1 (v3.11.1:a7a450f84a, Dec 6 2022, 15:24:06) [Clang 13.0.0 (clang-1300.0.29.30)]
CPython
macOS-12.7.6-x86_64-i386-64bit
1.84
### Expected behaviour
seqform genbank
##The warning line…
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First of all, I'd like to thank you for the amazing work done!
Secondly, I'm working on a fungal species with very high levels of chromosomal polymorphism and large translocations (of Mbp), and I alr…
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Dear author,
I would like to ask about how to set the number of chromosomes, because I want to use this software to calculate the TWAS of other species. For example, the number of chromosomes of my …
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```
$ python3
Python 3.10.12 (main, Nov 20 2023, 15:14:05) [GCC 11.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> from SigProfilerSimulator import SigProf…
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Hi,
I am trying to detect inter-chromosomal translocation events from targeted DNA-Seq data (PCR-based assay). Essentially I'd like to extract read pairs with R1 and R2 mapped to different chromoso…
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Hello,
Thank you for the software--it seems very promising. I am having an issue with generating results, however, as the output file is always empty and the log only gives an error "WARNING: Reac…
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I liked your idea to write the invalid UMI reads to a separate file instead of doing nothing at all with them. I think I will utilize this in my script as well.
Your algorithm looks like it will c…
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Hello,
I'm trying to run a script using HTSeq- count. I tried to use **--add-chromosome-info** as I need to have the chromosomal coordinate in my output file. Here is the script that I used:
**m…