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I realized one thing: currently, `to_Seurat` will always write the expression to the assay of `'RNA'`. I wonder if devs may add an option so that we can customize the assay the expression to be writte…
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This is a great tool! Thank you for development. Can you please generate/provide similar T subset resources for mouse datasets? It will be greatly useful as many labs including ours generate CITE-seq …
nroak updated
3 months ago
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Dear @sjfleming,
Thank you for developing this very useful tool and the clear descriptions in the paper. We are looking forward to using it ourselves but I have some questions concerning the use of…
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Hi, I have 2 issues, one is when setting the estimated cell number, CITE-seq-Count appears to force the cell count to that number. I am worried this can lead to inaccurate/biased results. For examp…
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- [x] Remove all donwstream analyses e.g., DeSeq & PCA
- [x] change script [[count-matrix.py](http://count-matrix.py/)](http://count-matrix.py/) line 40 sep="\t" to sep = ","
- [x] switch to one s…
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Hello,
I'm getting the following error during UMI correction, when running CITE-seq-Count 1.4.5, Python 3.8.
```
Correcting umis
Traceback (most recent call last):
File "/data/home/hmy961/c…
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Hello,
I’m contacting you to understand better if there is any restriction on using the scTranslator model for research purposes. I've tried sending you an email directly, but your email server bl…
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I've written this a few times in the past, but I can't say this often enough: Thank you for sharing your excellent analysis software with the community!
I'm writing to inquire about the possibility…
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Hi there,
Congrats on a great work, and thanks for developing this package.
I am attempting to pull TCR-seq data for T cells that also have the GEX/CITE-seq Seurat objects.
**QUESTION 1.** …
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Dear Will,
I currently work with a dataset containing both gene expression data and surface marker information, using cite-seq. Now I wonder if you think there is any inherent problem with using all…