-
If die at the last attempt because of OOM error -> report this complex in the final report and proceed with analysis.
-
Hello,
Thank you for your work on ProteinMPNN!
I encountered a bug when I was trying to run the pipeline on a sample with several short unknown chains (like `'P' = 'XXXX'`). Those chains were no…
-
## Expected Behavior
Thanks for your amazing tool! I want to obtain clustering results for a set of protein complex structures, not the clustering results of each chain within the protein complexes.
…
-
It would be great if all of the subunits of the complex were instantiated from the data in the GPAD?GPI file
(it's really tedious to have to enter them using has_part)
-
Bonjour à tous,
Je ne crois pas que la question gestion des complexes d'espèces ait déjà été abordée ?
Je souhaite lancer la réflexion sur la possibilité d'ajouter des "taxons candidats" en plus d…
-
I followed the default data preprocessing procedure in the original code and stored the pdbbind dataset in the form of a heterogeneous graph. However, when I read the heterogeneous graph file heterogr…
-
Hi,
I am trying to run the decoupleR pipeline for TF enrichment analysis.
Please help.
Trying the code using OmnipathR:
> net sessionInfo()
R version 4.1.0 (2021-05-18)
Platform: x86_64-pc-…
-
How hard would it be to allow the region bounded by a set of edges to be filled in?
This would be useful for my computational topology class
-
```python
>>> from sympy import Eq, sign, Symbol, solveset
>>> x = Symbol('x', real=True)
>>> solveset(Eq(sign(1-1/x**2)/x**3, 0))
Complement(ConditionSet(x, Eq(sign((x**2 - 1)/x**2), 0), Complexes), …
-
Thanks for you opening our source code and the fantastic works.
I have a few questions I’d like to ask.
Firstly, the protein-ligand complexes in MISATO likely come primarily from the PDBbind dat…