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Hi
I am using the standalone RDP classifier to annotate our assemblies. But I find that the RDP nomenclature is different from NCBI nomenclature, such as the NCBI genus Anabaena of phylum Cyanobacter…
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Hi @TomasTorsvik,
I was briefly discussing with @JorgSchwinger about the next steps to be taken towards the iHAMOCC version for NorESM2.5 (as summarized in #340). We introduced those switches for cy…
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Tentative plans for default (and optional) settings for BLOM/iHAMOCC towards NorESM2.5
- [x] BLOM code refactorization
- [ ] hybrid coordinates (default) (isopycnal optional)
- [ ] only mks (defa…
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![Screenshot from 2021-05-26 14-32-21](https://user-images.githubusercontent.com/58941541/119714173-37b02180-be6b-11eb-868f-8411c2cfbf09.png)
Hello dear colleagues! I'm a student. And i just starte…
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Hello everybody. I am using the following script:
### Difference of our samples at specific taxonomic levels ###
# In order to grow up all the OTUs that have the same taxonomy at a certain taxon…
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Dear all,
I did use the package for differential abundance test and to determine the indicator taxa using LEfSe method. I created LDA barplot and abundance plot. I noticed that in some cases one o…
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Hi,
First of all I want to say that CarveMe is really an amazing tool! Thanks for making it so easy to use!
I am using it to reconstruct various networks but with the new version I could not use t…
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Hi,
I used VirSorter v2.1 on contigs from environmental metagenomes. I selected potential viral contigs with score >0.8. I then verify completeness with checkV. Several potential viral contigs whe…
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Hi Mike,
I'm a PhD student in Laura Hug's lab currently working on a side project related to constructing universal ToLs. I was following your ToL example using the universal marker gene set and no…
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The `aggregate_*` methods, when dealing with missing taxonomic information return the entire row where there is information combined as shown below.
```
library(jeevanuDB)
library(microbiome)
…